MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-36-o38

Family name MIR-36 (all species)
Seed CACCGGG
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID
Paralogues Gsa-Mir-36-o39 
Orthologues Agr-Mir-36  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) G. salaris
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006952682: 33007-33101 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAUAAUAUUGAUAAGAGUCUCGUUUGUGGCUUGAUGUUUCUCCGGUAGAUGGAAAUUUUAAUGAGUAAACCUUUUUCUAAAGUUCAAUCUCUAAUUACAUCACCGGGUAGACAUUCAUCCACUGACGUAUUUUAUAGAAAGACUCAGAGCAG
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Structure
        10           20        30         40        50        60        70       
AAGAAUAAUAUUGAUAA---|   CU    U    CU   -     CU     A    GAAAUUUUAAUGAGUAAACCUU 
                    GAGU  CGUU GUGG  UGA UGUUU  CCGGU GAUG                      U
                    UUUA  GCAG CACC  ACU ACAGA  GGCCA CUAC                      U
GACGAGACUCAGAAAGAUAU^   U-    U    U-   U     UG     -    AUUAAUCUCUAACUUGAAAUCU 
   150       140        130        120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Gsa-Mir-36-o38_5p*
mirBase accessionNone
Sequence 
0- GGCUUGAUGUUUCUCCGGUAGAUG -24
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Mature sequence

Gsa-Mir-36-o38_3p
mirBase accessionNone
Sequence 
72- UCACCGGGUAGACAUUCAUCCAC -95
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