Mir-36-o14

MirGeneDB ID

Cbr-Mir-36-o14

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-35e

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o6 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Esc-Mir-36-P14 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Obi-Mir-36-P14 Ofu-Mir-36 Ovu-Mir-36-P14 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

X: 15371290-15371352 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o14)

Mir-36-o11 X: 15370852-15370914 [+] Ensembl
Mir-36-o15 X: 15371011-15371072 [+] Ensembl
Mir-36-o2 X: 15371151-15371212 [+] Ensembl
Mir-36-o14 X: 15371290-15371352 [+] Ensembl
Mir-36-o3 X: 15372046-15372108 [+] Ensembl
Mir-36-o4 X: 15372216-15372277 [+] Ensembl
Mir-36-o5 X: 15372356-15372417 [+] Ensembl
Mir-36-o6 X: 15372549-15372611 [+] Ensembl
Mir-36-o7c X: 15372700-15372762 [+] Ensembl
Mir-36-o8c X: 15372864-15372926 [+] Ensembl
Mir-36-o7b X: 15373015-15373077 [+] Ensembl
Mir-36-o8b X: 15373179-15373241 [+] Ensembl
Mir-36-o7a X: 15373330-15373392 [+] Ensembl
Mir-36-o9 X: 15373482-15373545 [+] Ensembl
Mir-36-o8a X: 15373647-15373709 [+] Ensembl
Mir-36-o10 X: 15373788-15373849 [+] Ensembl
Mir-36-o18 X: 15374070-15374131 [+] Ensembl
Mir-36-o16 X: 15374480-15374545 [+] Ensembl
Mir-36-o17 X: 15374624-15374686 [+] Ensembl
Mir-36-o12 X: 15375015-15375077 [+] Ensembl
Mir-36-o26 X: 15378480-15378543 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UACUAAUCUUUGAGGUCCGAGUCGGACCUGCCCUGAUUCUUGCUGCAGUGAUAUUUCGAACGGCUAGAUUAUCACCGGGUGACAAUUAGGACAGGUCCGACCCCUAGUGACCCGGAUUGCUUA

Get precursor sequence

Structure

        10        20          30        40        50        60 
UACUAAUCUUUGAGGUCCGA--|         C       C UG  GCA      UUUCGAA 
                      GUCGGACCUG CCUGAUU U  CU   GUGAUA       C
                      CAGCCUGGAC GGAUUAA A  GG   CACUAU       G
AUUCGUUAGGCCCAGUGAUCCC^         A       C GU  GC-      UAGAUCG 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o14_5p*

mirBase accession

None

Sequence

0- CCCUGAUUCUUGCUGCAGUGAUA -23

Get sequence

Mature sequence

Cbr-Mir-36-o14_3p

mirBase accession

MIMAT0011468

Sequence

41- UCACCGGGUGACAAUUAGGACA -63

Get sequence