MirGeneDB ID | Ovu-Mir-36-P14 |
Family name |
MIR-36 (all species) |
Seed |
CACCGGG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Mir-36-P15
|
Orthologues |
Agr-Mir-36
Bge-Mir-36
Cbr-Mir-36-o14
Cte-Mir-36
Dgr-Mir-36
Dlo-Mir-36
Dma-Mir-36
Dpu-Mir-36
Eba-Mir-36
Esc-Mir-36-P14
Gsp-Mir-36
Isc-Mir-36
Lhy-Mir-36
Llo-Mir-36
Mgi-Mir-36
Mom-Mir-36
Npo-Mir-36
Obi-Mir-36-P14
Ofu-Mir-36
Pau-Mir-36
Pcr-Mir-36
Pdu-Mir-36
Pve-Mir-36
Rph-Mir-36
Snu-Mir-36
Tca-Mir-36
War-Mir-36
|
Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Protostomia
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01026523.1: 148436-148500 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UGCUUUAAACUUUUACUGGUUGUUUUGAGUGGAUGAUGUCUGCCCGGGAGGUGUGUGCAGUUAACUUUAUCAUCACCGGGUGAACAUUCAUUCGCUUAACUCCAACCAAUCGCAACGCUGAAGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGCUUUAAACUUUUACU- UU- -| CU GA UGUGCAGU
GGUUG UUGAGUGGAUG AUGU GCCCGG GGUG \
CCAAC AAUUCGCUUAC UACA UGGGCC CUAC U
UAGAAGUCGCAACGCUAA CUC U^ AG A- UAUUUCAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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Star sequence |
Ovu-Mir-36-P14_5p* |
mirBase accession | None |
Sequence |
0- GGAUGAUGUCUGCCCGGGAGGUG -23
Get sequence
|
Mature sequence |
Ovu-Mir-36-P14_3p |
mirBase accession | None |
Sequence |
42- UCACCGGGUGAACAUUCAUUCGC -65
Get sequence
|