Mir-36-o6

MirGeneDB ID

Cbr-Mir-36-o6

Family name

MIR-36 (all species)

Seed

CACCGGG

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-35b-5

Paralogues

Cbr-Mir-36-o1 Cbr-Mir-36-o2 Cbr-Mir-36-o3 Cbr-Mir-36-o4 Cbr-Mir-36-o5 Cbr-Mir-36-o7a Cbr-Mir-36-o7b Cbr-Mir-36-o7c Cbr-Mir-36-o8a Cbr-Mir-36-o8b Cbr-Mir-36-o8c Cbr-Mir-36-o9 Cbr-Mir-36-o10 Cbr-Mir-36-o11 Cbr-Mir-36-o12 Cbr-Mir-36-o13 Cbr-Mir-36-o14 Cbr-Mir-36-o15 Cbr-Mir-36-o16 Cbr-Mir-36-o17 Cbr-Mir-36-o18 Cbr-Mir-36-o19 Cbr-Mir-36-o20 Cbr-Mir-36-o21 Cbr-Mir-36-o22 Cbr-Mir-36-o23 Cbr-Mir-36-o24 Cbr-Mir-36-o25 Cbr-Mir-36-o26

Orthologues

Agr-Mir-36 Bge-Mir-36 Cel-Mir-36-P6 Cte-Mir-36 Dgr-Mir-36 Dlo-Mir-36 Dma-Mir-36 Dpu-Mir-36 Eba-Mir-36 Gsp-Mir-36 Isc-Mir-36 Lhy-Mir-36 Llo-Mir-36 Mgi-Mir-36 Mom-Mir-36 Npo-Mir-36 Ofu-Mir-36 Pau-Mir-36 Pcr-Mir-36 Pdu-Mir-36 Pve-Mir-36 Rph-Mir-36 Snu-Mir-36 Tca-Mir-36 War-Mir-36

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Protostomia

Genome context
(CB4)

X: 15372549-15372611 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-36-o6)

Mir-36-o11 X: 15370852-15370914 [+] Ensembl
Mir-36-o15 X: 15371011-15371072 [+] Ensembl
Mir-36-o2 X: 15371151-15371212 [+] Ensembl
Mir-36-o14 X: 15371290-15371352 [+] Ensembl
Mir-36-o3 X: 15372046-15372108 [+] Ensembl
Mir-36-o4 X: 15372216-15372277 [+] Ensembl
Mir-36-o5 X: 15372356-15372417 [+] Ensembl
Mir-36-o6 X: 15372549-15372611 [+] Ensembl
Mir-36-o7c X: 15372700-15372762 [+] Ensembl
Mir-36-o8c X: 15372864-15372926 [+] Ensembl
Mir-36-o7b X: 15373015-15373077 [+] Ensembl
Mir-36-o8b X: 15373179-15373241 [+] Ensembl
Mir-36-o7a X: 15373330-15373392 [+] Ensembl
Mir-36-o9 X: 15373482-15373545 [+] Ensembl
Mir-36-o8a X: 15373647-15373709 [+] Ensembl
Mir-36-o10 X: 15373788-15373849 [+] Ensembl
Mir-36-o18 X: 15374070-15374131 [+] Ensembl
Mir-36-o16 X: 15374480-15374545 [+] Ensembl
Mir-36-o17 X: 15374624-15374686 [+] Ensembl
Mir-36-o12 X: 15375015-15375077 [+] Ensembl
Mir-36-o26 X: 15378480-15378543 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUAUGAAGCGUAGUUUGGGUCGGACCUCCGCUGGCUUUUUCCACGGUGAUACUCCAAAGCAAGUGGUUAUCACCGGGUGAAAACUGGUAGAGGUCCGAUCCACUCGGACCACCAUCAUUCC

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGCUAUGAAGCGUAGUU--|            CG UG C    U  A        CUCCAAA 
                   UGGGUCGGACCUC  C  G UUUU CC CGGUGAUA       G
                   ACCUAGCCUGGAG  G  C AAAG GG GCCACUAU       C
CCUUACUACCACCAGGCUC^            AU GU A    U  -        UGGUGAA 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Star sequence

Cbr-Mir-36-o6_5p*

mirBase accession

None

Sequence

0- CGCUGGCUUUUUCCACGGUGAUA -23

Get sequence

Mature sequence

Cbr-Mir-36-o6_3p

mirBase accession

MIMAT0011483

Sequence

41- UCACCGGGUGAAAACUGGUAGA -63

Get sequence