MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-36-P27

Family name MIR-36 (all species)
Seed CACCGGG
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-36-P26a  Ava-Mir-36-P26b  Ava-Mir-36-P28a  Ava-Mir-36-P28b  Ava-Mir-36-P29a  Ava-Mir-36-P29b 
Orthologues Agr-Mir-36  Asu-Mir-36-o27  Bge-Mir-36  Cte-Mir-36  Dgr-Mir-36  Dlo-Mir-36  Dma-Mir-36  Dpu-Mir-36  Eba-Mir-36  Gsp-Mir-36  Isc-Mir-36  Lhy-Mir-36  Llo-Mir-36  Mgi-Mir-36  Mom-Mir-36  Npo-Mir-36  Ofu-Mir-36  Pau-Mir-36  Pcr-Mir-36  Pdu-Mir-36  Pve-Mir-36  Rph-Mir-36  Snu-Mir-36  Tca-Mir-36  War-Mir-36 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075493.1: 6879147-6879208 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUGUUUCUUCUUGUUCUCAAUGAACAAUUUCACCGGGCUUGAAUGAAAUUCGUAGAAAACUUCAACCGAGGCAUUCAAUGUUUGGUGUAAAUUGUAAUUGAUUUCUCGUUGAAUAGGAGAC
Get precursor sequence
Structure
        10           20        30          40        50        60
UAUGUUUCUUCUUGUUC---     GA       -        -|      AAAU   UAGAAA 
                    UCAAU  ACAAUUU CACCGGGC UUGAAUG    UCG      A
                    AGUUA  UGUUAAA GUGGUUUG AACUUAC    AGC      C
CAGAGGAUAAGUUGCUCUUU     A-       U        U^      GG--   CAACUU 
120       110       100         90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To To
Mature sequence

Ava-Mir-36-P27_5p
mirBase accessionNone
Sequence 
0- UCACCGGGCUUGAAUGAAAUUCG -23
Get sequence
Star sequence

Ava-Mir-36-P27_3p*
mirBase accessionNone
Sequence 
39- AGGCAUUCAAUGUUUGGUGUAAA -62
Get sequence