| MirGeneDB ID | Ava-Mir-29-o9 |
|---|
| Family name |
MIR-29 (all species) |
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| Seed |
AGCACCA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-29-o8
|
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| Orthologues |
Gsp-Mir-29
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075496.1: 13731931-13731993 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UACACACAUAUAGACAUCUUGCACGAAACGGCUGAUACACUUUGUGCAUUGUUUGAUUUGCUCUGACUUACAAGCACCAGGUGAUAUCAGCUUCUCUCGGCGGGGAUAACAACAACCUUUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UACACACAUAUAGACAU-- A AAC- -| U A UUGAUUUG
CUUGC CGA GGCUGAUA CACUU GUGC UUGU \
GGGCG GCU UCGACUAU GUGGA CACG AACA C
UUUUUUCCAACAACAAUAG - CUCU A^ C - UUCAGUCU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-29-o9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GCUGAUACACUUUGUGCAUUGU -22
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-29-o9_3p |
| mirBase accession | None |
|---|
| Sequence |
41- AAGCACCAGGUGAUAUCAGCUU -63
Get sequence
|
|---|
