| MirGeneDB ID | Ava-Novel-17-P1 |
|---|
| Family name |
AVA-NOVEL-17 (all species) |
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| Seed |
AACUCGA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Novel-17-P2
|
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| Orthologues |
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| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 7691576-7691633 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAAUGUAUAUCGAUUUGGUUAUGUAAAUCACCUCUGCGUUCGAGUUCAUUCGGAUUAUUUUAUAUAAACUCGAACUCACAGGUGGAUGUACAACCAAAUUAACGACGCGUACAAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AAAAAUGUAUAUCGAUU---| UA AA- C C C UCGGAU
UGGU UGUA UCACCU UG GUUCGAGUU AU U
ACCA ACAU GGUGGA AC CAAGCUCAA UA A
UAAACAUGCGCAGCAAUUAA^ -- GUA C U A UAUUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Novel-17-P1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CACCUCUGCGUUCGAGUUCAU -21
Get sequence
|
|---|
| Mature sequence |
Ava-Novel-17-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAACUCGAACUCACAGGUGGA -58
Get sequence
|
|---|
