| MirGeneDB ID | Ava-Novel-17-P2 |
|---|
| Family name |
AVA-NOVEL-17 (all species) |
|---|
| Seed |
AACUCGA |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-17-P1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075492.1: 8603526-8603583 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACAAUAUGUAAAUAUUUGGCUCUUGUAAAUCACCUCUGCUUUCGAGUUCAUUCGUACUAUCAAAUAUAAACUCGAACUCACGGGUGGAUAUACAGCCAGAUUAACGACAUUUUUUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAAUAUGUAAAUAUUU----| CUU A - C CU C UCGUAC
GGCU GUA AUC ACCU UG UUCGAGUU AU U
CCGA CAU UAG UGGG AC AAGCUCAA UA A
UACUUUUUUACAGCAAUUAGA^ --- A G C UC A UAAACU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Novel-17-P2_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CACCUCUGCUUUCGAGUUCAU -21
Get sequence
|
|---|
| Mature sequence |
Ava-Novel-17-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAACUCGAACUCACGGGUGGA -58
Get sequence
|
|---|
