| MirGeneDB ID | Ava-Novel-2-P1 |
|---|
| Family name |
AVA-NOVEL-2 (all species) |
|---|
| Seed |
CACCGGU |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-2-P2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 2491111-2491168 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAAACCAACAAGAAACUUUUUCAGACGCCAUCACCGGUUAUCAGGAACGCUUUGAUACAUGACUCGGCGUGUCUGUUCACCGGUGAAAACUGUUUGAAAGUCGUUUGUCAUAUACAAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAAACCAACAAGAAACU- CCA-| UAU GA UUGAUA
UUUUCAGACG UCACCGGU CAG ACGCU C
GAAAGUUUGU AGUGGCCA GUC UGCGG A
UAACAUAUACUGUUUGCU CAAA^ CUU UG CUCAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Novel-2-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCACCGGUUAUCAGGAACGCU -21
Get sequence
|
|---|
| Star sequence |
Ava-Novel-2-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CGUGUCUGUUCACCGGUGAAA -58
Get sequence
|
|---|
