| MirGeneDB ID | Ava-Novel-2-P2 |
|---|
| Family name |
AVA-NOVEL-2 (all species) |
|---|
| Seed |
CACCGGU |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-2-P1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075492.1: 12548571-12548628 [-]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
UGAGCAGAAAAAAAACCUUUUCUAACGUGAUCACCGGUAAUCAGGAACGCUUCGAUAUGCAAUACGGCGUGUCUGUUGGCCGGUGAAAACUGUGUGAAAAUCGUUUGUCAUCGGUUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGAGCAGAAAAAAAACC- UA -| GA AAU GA UCGAUA
UUUUC AC GU UCACCGGU CAG ACGCU U
AAAAG UG CA AGUGGCCG GUC UGCGG G
GAUUGGCUACUGUUUGCU UG U^ AA GUU UG CAUAAC
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Novel-2-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCACCGGUAAUCAGGAACGCU -21
Get sequence
|
|---|
| Star sequence |
Ava-Novel-2-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- CGUGUCUGUUGGCCGGUGAAA -58
Get sequence
|
|---|
