MirGeneDB ID | Ava-Novel-6-P1 |
---|---|
Family name | AVA-NOVEL-6 (all species) |
Seed | CACUGUA |
Species | Bdelloid rotifer (Adineta vaga) |
MiRBase ID | |
Paralogues | Ava-Novel-6-P2 |
Orthologues | |
Node of Origin (locus) | A. vaga |
Node of Origin (family) | A. vaga |
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 2491586-2491648 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | CUAUAUCAAUAAGUGACUCUGAUAUUCAUGUCACUGUAUUUCCUACCUCGCUUUUGGCUCUUGUAUCAGCGAGUGUAGUUAAUAGCAGUGACCUGAAAUGAUCUGAGAAUUCGAACACACACUGet precursor sequence |
Structure | 10 20 30 40 50 CUAUAUCAAUAAGUGACUCUGAUA-- U - UC -| UUUGGCU UUCA GUCACUG UAUU CUAC CUCGCU \ AAGU CAGUGAC AUAA GAUG GAGCGA C UCACACACAAGCUUAAGAGUCUAGUA C G UU U^ CUAUGUU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Ava-Novel-6-P1_5p |
mirBase accession | None |
Sequence |
0- UCACUGUAUUUCCUACCUCGCU -22
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|
Star sequence | Ava-Novel-6-P1_3p* |
mirBase accession | None |
Sequence |
39- CGAGUGUAGUUAAUAGCAGUGACC -63
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|