| MirGeneDB ID | Ava-Novel-6-P1 |
|---|
| Family name |
AVA-NOVEL-6 (all species) |
|---|
| Seed |
CACUGUA |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Novel-6-P2
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 2491586-2491648 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUAUAUCAAUAAGUGACUCUGAUAUUCAUGUCACUGUAUUUCCUACCUCGCUUUUGGCUCUUGUAUCAGCGAGUGUAGUUAAUAGCAGUGACCUGAAAUGAUCUGAGAAUUCGAACACACACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAUAUCAAUAAGUGACUCUGAUA-- U - UC -| UUUGGCU
UUCA GUCACUG UAUU CUAC CUCGCU \
AAGU CAGUGAC AUAA GAUG GAGCGA C
UCACACACAAGCUUAAGAGUCUAGUA C G UU U^ CUAUGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Ava-Novel-6-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCACUGUAUUUCCUACCUCGCU -22
Get sequence
|
|---|
| Star sequence |
Ava-Novel-6-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- CGAGUGUAGUUAAUAGCAGUGACC -63
Get sequence
|
|---|
