MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-12490

Family name MIR-12490 (all species)
Seed AAAGGUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues
Orthologues Bla-Mir-12490 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049989.1: 2530565-2530626 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CGUCAAAGAGAUCCAACGCUCACCCAGUCAUCUGCUACUGACUCGCUUUAAUGUAACGCCGUUGGAGAGUUAAAGGUGGUCAGUAGUAGGUCACUGUGGGGGUCCGAGCAUCCGUCUGAUGU
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Structure
        10          20         30        40        50        60
CGUCAAAGAGAUCCAAC--|   A  -    C              CG       GUAACGC 
                   GCUC CC CAGU AUCUGCUACUGACU  CUUUAAU       C
                   UGGG GG GUCA UGGAUGAUGACUGG  GAAAUUG       G
UGUAGUCUGCCUACGAGCC^   -  U    C              UG       AGAGGUU 
120       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Bfl-Mir-12490_5p* (predicted)

mirBase accessionNone
Sequence
0- UCUGCUACUGACUCGCUUUAAU -22
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Mature sequence

Bfl-Mir-12490_3p (predicted)

mirBase accessionNone
Sequence
40- UAAAGGUGGUCAGUAGUAGGUC -62
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