| MirGeneDB ID | Bfl-Mir-12490 |
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| Family name |
MIR-12490 (all species) |
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| Seed |
AAAGGUG |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bla-Mir-12490
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049989.1: 2530565-2530626 [+]
UCSC
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Precursor
(pre-Mir +30nt flank) |
CGUCAAAGAGAUCCAACGCUCACCCAGUCAUCUGCUACUGACUCGCUUUAAUGUAACGCCGUUGGAGAGUUAAAGGUGGUCAGUAGUAGGUCACUGUGGGGGUCCGAGCAUCCGUCUGAUGU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CGUCAAAGAGAUCCAAC--| A - C CG GUAACGC
GCUC CC CAGU AUCUGCUACUGACU CUUUAAU C
UGGG GG GUCA UGGAUGAUGACUGG GAAAUUG G
UGUAGUCUGCCUACGAGCC^ - U C UG AGAGGUU
120 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Bfl-Mir-12490_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UCUGCUACUGACUCGCUUUAAU -22
Get sequence
|
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| Mature sequence |
Bfl-Mir-12490_3p (predicted) |
| mirBase accession | None |
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| Sequence |
40- UAAAGGUGGUCAGUAGUAGGUC -62
Get sequence
|
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