| MirGeneDB ID | Bla-Mir-12490 |
|---|
| Family name |
MIR-12490 (all species) |
|---|
| Seed |
AAAGGUG |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bfl-Mir-12490
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000359: 230266-230327 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAAGAAAGAGAUCGAAACCUCACGCAGUCAUCUGCUACUGACUCGCUUUAAUGUAACGCCGUUGAAGAGUUAAAGGUGGUCAGUAGUAGGUCACUGUGGGGGUCCGUACCGCCGUCUGAUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAAGAAAGAGAUCGAAA---| A C CG GUAACGC
CCUC CGCAGU AUCUGCUACUGACU CUUUAAU C
GGGG GUGUCA UGGAUGAUGACUGG GAAAUUG G
UGUAGUCUGCCGCCAUGCCU^ - C UG AGAAGUU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Mir-12490_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UCUGCUACUGACUCGCUUUAAU -22
Get sequence
|
|---|
| Mature sequence |
Bla-Mir-12490_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UAAAGGUGGUCAGUAGUAGGUC -62
Get sequence
|
|---|
