| MirGeneDB ID | Bfl-Mir-12492 |
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| Family name |
MIR-12492 (all species) |
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| Seed |
CAUGAUA |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bla-Mir-12492
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049982.1: 15812188-15812247 [-]
UCSC
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Precursor
(pre-Mir +30nt flank) |
GAACGAGACUGCCAUUUUCCCGCGGUCGGGUACUGUGUCCUUCCAUCAUAGUGUGUUUCUAUACGUCACCAUGAUACAGGACACAGUCCCUGACUGUGGGACCAAGCACGGCCGUGGCAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAACGAGACUGCCAUUU--| U UCC A UGUUUC
UCCCGCGGUCGGG ACUGUGUCCU AUCAU GUG \
AGGGUGUCAGUCC UGACACAGGA UAGUA CAC U
AACGGUGCCGGCACGAACC^ C CA- C UGCAUA
. 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
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| Motifs | UGUG in loop |
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Tissue expression
|
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| Star sequence |
Bfl-Mir-12492_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- UACUGUGUCCUUCCAUCAUAGUG -23
Get sequence
|
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| Mature sequence |
Bfl-Mir-12492_3p (predicted) |
| mirBase accession | None |
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| Sequence |
38- CCAUGAUACAGGACACAGUCCC -60
Get sequence
|
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