MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-12493

Family name MIR-12493 (all species)
Seed CCCUGGU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues
Orthologues Bla-Mir-12493 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049995.1: 4326931-4326989 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUUAUAUAUUGAACAGUUCCCAGGAUCAGUGACGGCUCCAUAAGCAGGGGCUGUGUGCCAGGCUAGCCCCUGGUUGUUGGGCCGAUACCUGGCUUUGUGGAAAAUACAUCCUAAACUCA
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Structure
        10         20          30        40        50        
UUUAUAUAUUGAACAGU-   -    AU  -|  A      C    G        GUGUG 
                  UCC CAGG  CA GUG CGGCUC AUAA CAGGGGCU     C
                  AGG GUUU  GU CAU GCCGGG UGUU GUCCCCGA     C
ACUCAAAUCCUACAUAAA   U    CG  C^  A      U    G        UCGGA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Bfl-Mir-12493_5p* (predicted)

mirBase accessionNone
Sequence
0- GACGGCUCCAUAAGCAGGGGCU -22
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Mature sequence

Bfl-Mir-12493_3p (predicted)

mirBase accessionNone
Sequence
36- CCCCUGGUUGUUGGGCCGAUACC -59
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