| MirGeneDB ID | Bla-Mir-12493 |
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| Family name |
MIR-12493 (all species) |
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| Seed |
CCCUGGU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bfl-Mir-12493
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000058: 970176-970234 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAGGCUACAGCACAGUUCCCAGGACCAGUGACGGCUCCGCAAGCAGGGGCUGUGAGCCAGGCUAGCCCCUGGUUGUUGUGCCGAUACCUGGCCUUGUGGAAAACACACCUUCUGUCCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAGGCUACAGCACAGU- - A -| A UCC G GUGAG
UCC CAGG CCA GUG CGGC GCAA CAGGGGCU C
AGG GUUC GGU CAU GCCG UGUU GUCCCCGA C
ACCUGUCUUCCACACAAA U C C^ A UGU G UCGGA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Star sequence |
Bla-Mir-12493_5p* |
| mirBase accession | None |
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| Sequence |
0- GACGGCUCCGCAAGCAGGGGCU -22
Get sequence
|
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| Mature sequence |
Bla-Mir-12493_3p |
| mirBase accession | None |
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| Sequence |
36- CCCCUGGUUGUUGUGCCGAUACC -59
Get sequence
|
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