MirGeneDB 3.0

MirGeneDB ID

Bla-Mir-12493

Family name MIR-12493 (all species)
Seed CCCUGGU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-12493 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000058: 970176-970234 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGGCUACAGCACAGUUCCCAGGACCAGUGACGGCUCCGCAAGCAGGGGCUGUGAGCCAGGCUAGCCCCUGGUUGUUGUGCCGAUACCUGGCCUUGUGGAAAACACACCUUCUGUCCA
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Structure
        10         20          30        40        50        
UGAGGCUACAGCACAGU-   -    A   -|  A    UCC    G        GUGAG 
                  UCC CAGG CCA GUG CGGC   GCAA CAGGGGCU     C
                  AGG GUUC GGU CAU GCCG   UGUU GUCCCCGA     C
ACCUGUCUUCCACACAAA   U    C   C^  A    UGU    G        UCGGA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Star sequence

Bla-Mir-12493_5p*

mirBase accessionNone
Sequence
0- GACGGCUCCGCAAGCAGGGGCU -22
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Mature sequence

Bla-Mir-12493_3p

mirBase accessionNone
Sequence
36- CCCCUGGUUGUUGUGCCGAUACC -59
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