MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-129-P8

Family name MIR-129 (all species)
Seed CCUUCUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-129b
Paralogues Bfl-Mir-129-P7 
Orthologues Bla-Mir-129-P8a  Bla-Mir-129-P8b 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Chordata
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049992.1: 13848286-13848343 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACUUCGCCGACUGUACCUACCAUGAUGGAUACCUUCUGUGGUUUGGGCGAUCGUGUGGUUGAGACGAAGCCCUUACCCCAAAAGGUGUCUGUCAUGGUAAGCUUCAACUGCCGUAAGA
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Structure
        10          20        30        40        50         
ACUUCGCCGACUGUACC--|                 C  U   UU    GA   UGUGG 
                   UACCAUGAUGGAUACCUU UG GGU  GGGC  UCG     \
                   AUGGUACUGUCUGUGGAA AC CCA  CCCG  AGC     U
AGAAUGCCGUCAACUUCGA^                 A  C   UU    A-   AGAGU 
      110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Mature sequence

Bfl-Mir-129-P8_5p

mirBase accessionMIMAT0020080
Sequence
0- ACCUUCUGUGGUUUGGGCGAUCG -23
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Star sequence

Bfl-Mir-129-P8_3p* (predicted)

mirBase accessionNone
Sequence
36- AAGCCCUUACCCCAAAAGGUGU -58
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