MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-2058

Family name MIR-2058 (all species)
Seed GAGAAGU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-2058
Paralogues
Orthologues Bla-Mir-2058 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049984.1: 18063129-18063187 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-2058)		 Mir-2058 NC_049984.1: 18063129-18063187 [-] UCSC
Mir-2057 NC_049984.1: 18064151-18064211 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AGCACGAAGAAAACAUUGAAGUCCGCGAAGUGAGAAGUAAGACUACCAUCCCGUGUGUGCUGUACCGGGGUGGGGUCUUGCUUCUUUCUUAGCGGGUUUACAACACGACGAUGGACGGU
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Structure
        10          20        30        40        50         
AGCACGAAGAAAACAUUG--| GU    G   U             A        UGUGU 
                    AA  CCGC AAG GAGAAGUAAGACU CCAUCCCG     G
                    UU  GGCG UUC UUCUUCGUUCUGG GGUGGGGC     C
UGGCAGGUAGCAGCACAACA^ UG    A   U             -        CAUGU 
       110       100        90        80         70        60
Deep sequencing
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CommentThe 3' end of the 5p arm might be monouridylated.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-2058_5p
mirBase accessionMIMAT0009984
Sequence 
0- UGAGAAGUAAGACUACCAUCCCG -23
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Star sequence

Bfl-Mir-2058_3p*
mirBase accessionMIMAT0019167
Sequence 
37- GGGUGGGGUCUUGCUUCUUUCU -59
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