MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-4859

Family name MIR-4859 (all species)
Seed GCAGCGA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4859
Paralogues
Orthologues Bla-Mir-4859 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049979.1: 14957279-14957338 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCCUGGACUCCAUCUUUGGCCUGUUGGAAAGCAGCGAGCAUUACGGUCAUUCUGACGCUGGAGAAUAUGACAGUAAUGCCCGCUGACUUCUAAUGGAGCUUCCUCUCAUCACUUCUGGA
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Structure
        10         20         30        40        50         
CUCCUGGACUCCAUCUUU-   -|        AG     A       G     UCUGACG 
                   GGC CUGUUGGAA  CAGCG GCAUUAC GUCAU       C
                   UCG GGUAAUCUU  GUCGC CGUAAUG CAGUA       U
AGGUCUUCACUACUCUCCU   A^        CA     C       A     UAAGAGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-4859_5p

mirBase accessionMIMAT0020086
Sequence
0- AGCAGCGAGCAUUACGGUCAUU -22
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Co-mature sequence

Bfl-Mir-4859_3p

mirBase accessionMIMAT0020087
Sequence
38- UGACAGUAAUGCCCGCUGACUU -60
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