MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-4869

Family name MIR-4869 (all species)
Seed CGAUGUU
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4869
Paralogues
Orthologues Bla-Mir-4869 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049988.1: 15245629-15245693 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-4869)		 Mir-4862 NC_049988.1: 15243748-15243805 [-] UCSC
Mir-4857 NC_049988.1: 15244458-15244521 [-] UCSC
Mir-4869 NC_049988.1: 15245629-15245693 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UUUUGCCCCCCUCUACUGCACAUUUCCGUUACGAUGUUGACUUCCGCUCCUCUGUGGUGAUAUCUGGACGAGAGGGACCUGUAGUCAACACGAGAUGGAACCGUGCCAAAAACUACAAACAAAAC
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Structure
        10          20        30        40         50        60  
UUUUGCCCCCCUCUACU--|   AU       A  A        UCCGC-      GUGGUGAU 
                   GCAC  UUCCGUU CG UGUUGACU      UCCUCU        \
                   CGUG  AAGGUAG GC ACAACUGA      GGGAGA        A
CAAAACAAACAUCAAAAAC^   CC       A  -        UGUCCA      GCAGGUCU 
   120       110       100         90        80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-4869_5p
mirBase accessionMIMAT0020108
Sequence 
0- ACGAUGUUGACUUCCGCUCCUCU -23
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Star sequence

Bfl-Mir-4869_3p*
mirBase accessionMIMAT0020109
Sequence 
43- GGGACCUGUAGUCAACACGAGA -65
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