MirGeneDB 3.0

MirGeneDB ID

Bfl-Mir-4872-P32

Family name MIR-4872 (all species)
Seed GCCGGGA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4872a
Paralogues Bfl-Mir-4872-P33a  Bfl-Mir-4872-P33b 
Orthologues
Node of Origin (locus) B. floridae
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049995.1: 13214051-13214109 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-4872-P32)
Mir-4872-P33a NC_049995.1: 13194568-13194626 [+] UCSC
Mir-4872-P33b NC_049995.1: 13194771-13194829 [+] UCSC
Mir-4872-P32 NC_049995.1: 13214051-13214109 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCUAUAUUGUUUUACUAGGUUCACAUGCAGUGCCGGGAUAACUAAAACUCUGAGUUCUGUUUACUUCAGAGUUUUGGUACCCCGGCUCCAUAUGGAACUACUUGCAGCCAAGUAAAAUC
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Structure
        10           20        30        40        50         
UCUAUAUUGUUUUACUA---|    A    CAGU      AUA             GUUCU 
                    GGUUC CAUG    GCCGGG   ACUAAAACUCUGA     G
                    UCAAG GUAU    CGGCCC   UGGUUUUGAGACU     U
CUAAAAUGAACCGACGUUCA^    -    ACCU      CA-             UCAUU 
       110       100         90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-4872-P32_5p

mirBase accessionMIMAT0020114
Sequence
0- UGCCGGGAUAACUAAAACUCUGA -23
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Star sequence

Bfl-Mir-4872-P32_3p* (predicted)

mirBase accessionNone
Sequence
37- AGAGUUUUGGUACCCCGGCUCC -59
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