MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-4876-P2

Family name MIR-4876 (all species)
Seed UUACGUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-4876
Paralogues Bfl-Mir-4876-P1 
Orthologues Bla-Mir-4876 
Node of Origin (locus) B. floridae
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049982.1: 26938689-26938749 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GAGAGAGAAGAUGGCAUGCUCGCGGCCACAGGUCUCACCUGGUGCGUAACGCUGGUAUCAGAUCUCGCCUUACGUGCCACGUGAGGACUCUUGGACGCGCAGCUCUAUCCACAGCCGUACC
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Structure
        10         20         30         40        50         
GAGAGAGAAGAUGGCAU-   -    G   CA   -|    C   UG     C  UGGUAU 
                  GCU CGCG CCA  GGU CUCAC UGG  CGUAA GC      C
                  CGA GCGC GGU  UCA GAGUG ACC  GCAUU CG      A
CCAUGCCGACACCUAUCU   C    A   UC   G^    C   GU     C  CUCUAG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
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To
Star sequence

Bfl-Mir-4876-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- GGUCUCACCUGGUGCGUAACGC -22
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Mature sequence

Bfl-Mir-4876-P2_3p

mirBase accessionMIMAT0020459
Sequence
38- CUUACGUGCCACGUGAGGACUCU -61
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