| MirGeneDB ID | Bge-Novel-6-P2 |
|---|
| Family name |
BGE-NOVEL-6 (all species) |
|---|
| Seed |
UGAAAUG |
|---|
| Species |
Cockroach (Blattella germanica) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bge-Novel-6-P1
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
B. germanica
|
|---|
| Node of Origin (family) |
B. germanica
|
|---|
Genome context
(Bger_2.0) |
KZ616355.1: 282659-282718 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCAAGUAACAUGUCAUAACUUUGCUUUCCCAGCUAAUCGUCCAUUUCAAUUGUGUUGUUUGAAAUCAAUGAAAUGGACGAUUGGCUGUGUGAGUACAAGCGAACUUCUUUUAUCAGCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAAGUAACAUGUCAUAA- -| UCC A UGUUGU
CUU UGCUU CAGCUAAUCGUCCAUUUCA UUG \
GAA AUGAG GUCGGUUAGCAGGUAAAGU AAC U
AACGACUAUUUUCUUCAAGC C^ UGU - UAAAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Bge-Novel-6-P2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGCUAAUCGUCCAUUUCAAUUG -23
Get sequence
|
|---|
| Mature sequence |
Bge-Novel-6-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AUGAAAUGGACGAUUGGCUGUG -60
Get sequence
|
|---|
