| MirGeneDB ID | Bpl-Mir-29-o3 |
|---|
| Family name |
MIR-29 (all species) |
|---|
| Seed |
AGCACCA |
|---|
| Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Gsp-Mir-29
|
|---|
| Node of Origin (locus) |
B. plicatilis
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Bpl_ASM1027981) |
QEOQ01000316.1: 109373-109456 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAAAACCUACUAACCAUAUUUACGAGAUUAGCUGAUAUACAUGGUGUAUUGUUAGUAUUGAAAAACUUGUUGCCAAAGUUAAAUCUUCUUACAAGCACCAGGUAAUAUCAGCUGACUCUAGUAAAUUGCUUGCCUCCUAACAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
UAAAACCUACUAACCAU- G - -| A A UAGUAUUGAAAAACUUGU
AUUUAC AGA UUAGCUGAUA UAC UGGUGU UUGU U
UAAAUG UCU AGUCGACUAU AUG ACCACG AACA G
CAACAAUCCUCCGUUCGU A C A^ G - UUCUUCUAAAUUGAAACC
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | The 3' end of the 3p arm may be monoadenylated. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bpl-Mir-29-o3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GCUGAUAUACAUGGUGUAUUGU -22
Get sequence
|
|---|
| Mature sequence |
Bpl-Mir-29-o3_3p |
| mirBase accession | None |
|---|
| Sequence |
62- AAGCACCAGGUAAUAUCAGCUG -84
Get sequence
|
|---|
