| MirGeneDB ID | Cbr-Novel-1 |
|---|
| Family name |
CBR-NOVEL-1 (all species) |
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| Seed |
UUGAAGU |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. briggsae
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| Node of Origin (family) |
C. briggsae
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Genome context
(CB4) |
I: 14504857-14504917 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUAUUCCCUAAAAAGCUGGCCACCGGGUCCGGGUUUUGUUUUCCUUCAUACCAUGUCCGAAAUAUAGUUUGAAGUAGAAGAGAGCCCCGAUCUGGUGUCUAGCCAGCUCCUUGUCCUAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUAUUCCCUAAAAAGC--| C C G C U CAUGUCC
UGG CACCGGGUC GGGUUUU UUUU CUUCA AC \
AUC GUGGUCUAG CCCGAGA AAGA GAAGU UG G
CAAUCCUGUUCCUCGACCG^ U C G U U AUAUAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
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| Star sequence |
Cbr-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGGUUUUGUUUUCCUUCAUACC -23
Get sequence
|
|---|
| Mature sequence |
Cbr-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUUGAAGUAGAAGAGAGCCCCGA -61
Get sequence
|
|---|
