| MirGeneDB ID | Cbr-Novel-3 |
|---|
| Family name |
CBR-NOVEL-3 (all species) |
|---|
| Seed |
GACCACG |
|---|
| Species |
Roundworm (Caenorhabditis briggsae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. briggsae
|
|---|
| Node of Origin (family) |
C. briggsae
|
|---|
Genome context
(CB4) |
II: 5323957-5324011 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UGCUCCAACAAAAAAUUCCGUCUUUCCAUACACAGAAGAUUUUGUGGUGAUAACAACAACUUAUGACCACGGACCCUUCUGUAUCUGGAAGAACCGGAAUCCUUUAAGUAAUAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCUCCAACAAAAAAUU- UC-| UAC AU G ACAA
CCG UUUCCA ACAGAAG UUUGUGGU AUA \
GGC GAAGGU UGUCUUC AGGCACCA UAU C
UUAUAAUGAAUUUCCUAA CAA^ CUA CC G UCAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Ea |
Ma |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Wh |
Yo |
Yo |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cbr-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CACAGAAGAUUUUGUGGUGAUA -22
Get sequence
|
|---|
| Mature sequence |
Cbr-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
33- UGACCACGGACCCUUCUGUAUC -55
Get sequence
|
|---|
