MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-1821

Family name MIR-1821 (all species)
Seed GAGGUCU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1821
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)		 chrV: 3042552-3042613 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1821)		 Mir-792 chrV: 3042105-3042166 [-] UCSC Ensembl
Mir-1821 chrV: 3042552-3042613 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCACUAUAAUAUGUAGUUGGUACAAGUUUGCCCAACUUGCAGACUUUUCAAUUUUCGGCAAGUGGAAUUGAGGUCUUAUAGUUAGGUAGACAUUUACUACAACUAAUAUAUAUUUUUUGA
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Structure
        10           20        30        40        50        60 
AUUCACUAUAAUAUGUA---| U    CAA       C    UGC     UU     UUUCGG 
                    GU GGUA   GUUUGCC AACU   AGACU  UCAAU      C
                    CA UCAU   CAGAUGG UUGA   UCUGG  AGUUA      A
AGUUUUUUAUAUAUAAUCAA^ -    UUA       A    UAU     --     AGGUGA 
120       110        100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-1821_5p*
mirBase accessionMIMAT0032034
Sequence 
0- UGCCCAACUUGCAGACUUUUCAAU -24
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Mature sequence

Cel-Mir-1821_3p
mirBase accessionMIMAT0006588
Sequence 
40- UGAGGUCUUAUAGUUAGGUAGA -62
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Proposed targets microrna.org: MIMAT0006588
TargetScanWorm: cel-miR-1821