MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-126-v2

Family name MIR-126 (all species)
Seed GUACCGU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-126
Paralogues Cin-Mir-126-v1 
Orthologues
Node of Origin (locus) Olfactores
Node of Origin (family) Olfactores
Genome context
(ci3)		 1: 5485228-5485289 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-126-v2)		 Mir-126-v1 1: 5485228-5485289 [-] UCSC Ensembl
Mir-126-v2 1: 5485228-5485289 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAAAGUGCCGUAACUGGUUUUCGAUGCUGCCUUGUUACCUACGGUACCAGGUAGAAAGUAUGUCAUCUCGUACCGUGAGUAAUAAAGCAUUCUCGGGAGCUCAAUGCAACCGGUACUAUA
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Structure
        10          20        30        40        50        60
UGUAAAGUGCCGUAACU--|   UU   UGC   C       C        C  GUAGAAA 
                   GGUU  CGA   UGC UUGUUAC UACGGUAC AG       G
                   UCGA  GCU   ACG AAUAAUG GUGCCAUG UC       U
AUAUCAUGGCCAACGUAAC^   GG   CUU   A       A        C  UACUGUA 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-126-v2_5p*
mirBase accessionMIMAT0015258
Sequence 
0- GCCUUGUUACCUACGGUACCAG -22
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Mature sequence

Cin-Mir-126-v2_3p
mirBase accessionMIMAT0006101
Sequence 
40- CGUACCGUGAGUAAUAAAGCAU -62
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