MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4010-P1

Family name MIR-4010 (all species)
Seed ACGUAUG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4010
Paralogues Cin-Mir-4010-P2 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 3: 3427170-3427233 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4010-P1)		 Mir-4010-P1 3: 3427170-3427233 [+] UCSC Ensembl
Mir-4010-P2 3: 3427170-3427233 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCACAAUCGUCCAUUUGUUGUUGUGUCAACGUAUGUCGAGCAAACAUUGCAUGAGUCAUCAUGACAUGGCAAGUUUGUCGCCAUACUUCACCACAGCUGCAAACUCACUUCAAUAAAACAA
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Structure
        10          20        30        40        50        60  
ACAUCACAAUCGUCCAU--|   U      UCAAC     U   G     A    AUGAGUCA 
                   UUGU GUUGUG     GUAUG CGA CAAAC UUGC        U
                   AACG CGACAC     CAUAC GCU GUUUG AACG        C
AACAAAAUAACUUCACUCA^   U      CACUU     C   -     -    GUACAGUA 
  120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4010-P1_5p
mirBase accessionNone
Sequence 
0- AACGUAUGUCGAGCAAACAUUGCA -24
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Star sequence

Cin-Mir-4010-P1_3p*
mirBase accessionMIMAT0016507
Sequence 
42- CAAGUUUGUCGCCAUACUUCAC -64
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