| MirGeneDB ID | Cin-Mir-4011-P1 |
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| Family name |
MIR-4011 (all species) |
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| Seed |
ACAGUGG |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4011a
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| Paralogues |
Cin-Mir-4011-P2
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000276.1: 10121-10182 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGCUUAGCGCUGAAUAGGCAGCUUAUUCUUCACAGUGGAGGUAAAGAUUGUGGUGAAUUUAAUGAACACGAUUUUUGCUUUCCACUGCACAAGAACAUGUAUGCAAAGUUCAACUCAGUGCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AGCUUAGCGCUGAAUAG- - UUA CA- -| GUGAAU
GCA GC UUCUU CAGUGG AGGUAAAGAUUGUG U
CGU UG AAGAA GUCACC UUCGUUUUUAGCAC U
UCGUGACUCAACUUGAAA A UAC CAC U^ AAGUAA
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4011-P1_5p |
| mirBase accession | MIMAT0016508 |
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| Sequence |
0- CACAGUGGAGGUAAAGAUUGUG -22
Get sequence
|
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| Star sequence |
Cin-Mir-4011-P1_3p* |
| mirBase accession | MIMAT0016509 |
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| Sequence |
38- CGAUUUUUGCUUUCCACUGCACAA -62
Get sequence
|
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