| MirGeneDB ID | Cin-Mir-4011-P2 |
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| Family name |
MIR-4011 (all species) |
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| Seed |
CACAGUG |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4011b
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| Paralogues |
Cin-Mir-4011-P1
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000354.1: 4673-4729 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUAAUUGCGACAAUGCCUAGAGCCUGACGUCACAGUGGAGGUAUACCUUGUUGUGUGACGUAACAACGGUAGCAUUCACUGUAACACUAGGACGGGAACUAUCGUCAAAGUCGUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUUAAUUGCGACAAUGC---| AGAG AC C G A UU UGUG
CU CCUG GU ACAGUGGA GU UACC GUUG A
GG GGAU CA UGUCACUU CG AUGG CAAC C
UUUGCUGAAACUGCUAUCAA^ GCA- CA A A - -- AAUG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4011-P2_5p |
| mirBase accession | MIMAT0016510 |
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| Sequence |
0- UCACAGUGGAGGUAUACCUUGUUG -24
Get sequence
|
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| Star sequence |
Cin-Mir-4011-P2_3p* |
| mirBase accession | MIMAT0016511 |
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| Sequence |
36- ACGGUAGCAUUCACUGUAACA -57
Get sequence
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