MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-4034

Family name MIR-4034 (all species)
Seed CACAGUG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4034
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
14: 3281763-3281819 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4034)
Mir-3598 14: 3281620-3281678 [-] UCSC Ensembl
Mir-4034 14: 3281763-3281819 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUCCCAAGUUAACGCGCGAACGACCCCGGCACAGUGCUCUAGGAAAGUAAAGCUCACUUCGUACUUUUCUCUGGCACUGCGAGCAUGGUUGCCUCGCCCUUCUCGCCGCCUGUAA
Get precursor sequence
Structure
        10         20         30          40        50       
GUUUCCCAAGUUAACGC-    A-     CCG  A--|      CU         AAGCU 
                  GCGA  CGACC   GC   CAGUGCU  AGGAAAGUA     C
                  CGCU  GUUGG   CG   GUCACGG  UCUUUUCAU     A
AAUGUCCGCCGCUCUUCC    CC     UA-  AGC^      UC         GCUUC 
     110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4034_5p

mirBase accessionMIMAT0016557
Sequence
0- GCACAGUGCUCUAGGAAAGUA -21
Get sequence
Star sequence

Cin-Mir-4034_3p*

mirBase accessionMIMAT0016558
Sequence
35- CUUUUCUCUGGCACUGCGAGCA -57
Get sequence