MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4047

Family name MIR-4047 (all species)
Seed CAGACAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4047
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 1: 4157238-4157294 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4047)		 Mir-4047 1: 4157238-4157294 [-] UCSC Ensembl
Mir-4065 1: 4176956-4177027 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCGCAUGUAUCACACAGAUGAACACGCAUCCAGACACUCAGAAACACGAUUUGUCGACACAAUUGUGUAUCUGAGUGUUUCUCUGUGUGAUUCACCGAAAGCAACGAUCGCUAAAC
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Structure
        10           20         30        40        50       
CCCGCAUGUAUCACACAGA---    -|     UCC           A        UGUC 
                      UGAA CACGCA   AGACACUCAGA ACACGAUU    \
                      ACUU GUGUGU   UUUGUGAGUCU UGUGUUAA    G
CAAAUCGCUAGCAACGAAAGCC    A^     CUC           A        CACA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4047_5p
mirBase accessionMIMAT0016583
Sequence 
0- CCAGACACUCAGAAACACGAUU -22
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Star sequence

Cin-Mir-4047_3p*
mirBase accessionMIMAT0016584
Sequence 
33- UUGUGUAUCUGAGUGUUUCUCUGU -57
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