MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-4054

Family name MIR-4054 (all species)
Seed AUGAUUG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4054
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)		 10: 3226199-3226256 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-4054)		 Mir-4054 10: 3226199-3226256 [-] UCSC Ensembl
Mir-34 10: 3230582-3230671 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAGUGAUUGACAACUUACCGUUUGACGGCUAUGAUUGAUGUUUAAUGGCUCUUAACAAAAACGUAGAGCUUUUGACCAUCUUUCUGCCAUCGCCCUGGUACUUUCAACAAGUAGAAU
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Structure
        10         20         30        40        50         
GCAGUGAUUGACAACUU-    UU-|  C   UAU  UU    U    U      UAACA 
                  ACCG   UGA GGC   GA  GAUG UUAA GGCUCU     A
                  UGGU   GCU CCG   CU  CUAC AGUU UCGAGA     A
UAAGAUGAACAACUUUCA    CCC^  A   U--  UU    C    U      UGCAA 
      110       100        90          80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4054_5p
mirBase accessionMIMAT0016597
Sequence 
0- UAUGAUUGAUGUUUAAUGGCUCU -23
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Star sequence

Cin-Mir-4054_3p*
mirBase accessionMIMAT0016598
Sequence 
37- AGCUUUUGACCAUCUUUCUGC -58
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