MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-4067

Family name MIR-4067 (all species)
Seed AAGGAAC
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4067
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
1: 1240455-1240513 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAUUAAAGUUUUCUAAUCAAUUCGGAGACAAGGAACGGAAAUGAGCCGUUGGUUGACUUAACUUCAGCGUUUCAUACGUUCCUUAUAUUUGAAUGGUUACUGGCAUCAUGUUUAUCC
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Structure
        10           20        30        40        50          
AGCAUUAAAGUUUUCUA---|   A      GAC        GAA     C      UUGAC 
                    AUCA UUCGGA   AAGGAACG   AUGAG CGUUGG     \
                    UGGU AAGUUU   UUCCUUGC   UACUU GCGACU     U
CCUAUUUGUACUACGGUCAU^   -      AUA        A--     U      UCAAU 
       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4067_5p

mirBase accessionMIMAT0016622
Sequence
0- CAAGGAACGGAAAUGAGCCGUUGG -24
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Star sequence

Cin-Mir-4067_3p*

mirBase accessionMIMAT0016623
Sequence
37- AGCGUUUCAUACGUUCCUUAUA -59
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