| MirGeneDB ID | Cja-Mir-1286 |
|---|
| Family name |
MIR-1286 (all species) |
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| Seed |
GUGGGAC |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Hsa-Mir-1286
Pab-Mir-1286
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021915.1: 209464348-209464403 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CUGGCCACUUCCUCAUUAGCAUCCUCUGGGGACUCAGCUUGCUCUGGCUGCUGGAUUGAAUUAGCUGUGGGACCAAGAUGAGCCCUUGGUGGAGACAGGAUUCUCCAGAUAAUUAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGGCCACUUCCUCAUUAGCA--| U UG A G C G U UGGAU
UCC C GGG CUCA CUUG UCU GC GC U
AGG G UCC GAGU GAAC AGG UG CG G
GAUUAAUAGACCUCUUAGGACAG^ U GU C A C G U AUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Cja-Mir-1286_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GACUCAGCUUGCUCUGGCUGC -21
Get sequence
|
|---|
| Mature sequence |
Cja-Mir-1286_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- UGUGGGACCAAGAUGAGCCCU -56
Get sequence
|
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