MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-1286

Family name MIR-1286 (all species)
Seed GCAGGAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-1286  Hsa-Mir-1286 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM068844.1: 27844084-27844139 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGGCCACUUCCUCAUUAGCGUCCUCUGGGGACUCAGCUUGCUCUGGCUGCUGGAUUGAAUUAGCUGCAGGACCAAGAUGAGCCCUUGGUGGAGAUAGGAUUCUCCAGAUAAUUAG
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Structure
        10        20          30        40        50       
CCGGCCACUUCCUCAUUAGCG--|  U UG   A    G    C   G  U  UGGAU 
                       UCC C  GGG CUCA CUUG UCU GC GC     U
                       AGG G  UCC GAGU GAAC AGG CG CG     G
GAUUAAUAGACCUCUUAGGAUAG^  U GU   C    A    C   A  U  AUUAA 
    110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-1286_5p* (predicted)

mirBase accessionNone
Sequence
0- GACUCAGCUUGCUCUGGCUGC -21
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Mature sequence

Pab-Mir-1286_3p (predicted)

mirBase accessionNone
Sequence
35- UGCAGGACCAAGAUGAGCCCU -56
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