MirGeneDB ID | Cja-Mir-1294 |
---|---|
Family name | MIR-1294 (all species) |
Seed | GUGAGGU |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | |
Orthologues | Hsa-Mir-1294 Mml-Mir-1294 Pab-Mir-1294 |
Node of Origin (locus) | Simiiformes |
Node of Origin (family) | Simiiformes |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 51620368-51620429 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAUCUGUUGAUUUAUGAUCUCGCUGAGUCCUGUGAGGUUGGCAUUGUUGUCUGGCAUUGUCUGAUGAUAUACAACAGUGCCAACCUCACAGGACUCAGUGAGAUGAAACUGAUUAGGAUUAGGet precursor sequence |
Structure | 10 20 30 40 50 60 GAUCUGUUGAUUUAUGA--| CUGGCAUUG UCUCGCUGAGUCCUGUGAGGUUGGCAUUGUUGU U AGAGUGACUCAGGACACUCCAACCGUGACAACA C GAUUAGGAUUAGUCAAAGU^ UAUAGUAGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Cja-Mir-1294_5p (predicted) |
mirBase accession | None |
Sequence |
0- UGUGAGGUUGGCAUUGUUGUCU -22
Get sequence
|
Star sequence | Cja-Mir-1294_3p* (predicted) |
mirBase accession | None |
Sequence |
40- ACAACAGUGCCAACCUCACAGG -62
Get sequence
|