MirGeneDB ID | Pab-Mir-1294 |
---|---|
Family name | MIR-1294 (all species) |
Seed | GUGAGGU |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | |
Orthologues | Cja-Mir-1294 Hsa-Mir-1294 Mml-Mir-1294 |
Node of Origin (locus) | Simiiformes |
Node of Origin (family) | Simiiformes |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 163045182-163045240 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GAUCUGUUCAUUUAUGAUCUCACUGAGUCCUGUGAGGUUGGCAUUGUUGUCUGGCAUUGUCUGAUAUACAACAGUGCCAACCUCACAGGACUCAGUGAGGUGAAACUGAGGAUUAGGAAGet precursor sequence |
Structure | 10 20 30 40 50 GAUCUGUUCAUUUAUGA--| CUGGCAUU UCUCACUGAGUCCUGUGAGGUUGGCAUUGUUGU \ GGAGUGACUCAGGACACUCCAACCGUGACAACA G AAGGAUUAGGAGUCAAAGU^ UAUAGUCU 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Pab-Mir-1294_5p |
mirBase accession | None |
Sequence |
0- UGUGAGGUUGGCAUUGUUGUCU -22
Get sequence
|
Star sequence | Pab-Mir-1294_3p* (predicted) |
mirBase accession | None |
Sequence |
37- ACAACAGUGCCAACCUCACAGG -59
Get sequence
|