| MirGeneDB ID | Cja-Mir-1908 |
|---|---|
| Family name | MIR-1908 (all species) |
| Seed | GGCGGGG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-1908 Mml-Mir-1908 Pab-Mir-1908 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 115597810-115597867 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCGCAGUGAGAUUUGGGGCCGGGGAUGCCGCGGCGGGGACGGCGAUUGGUCCGGAUGCGUGGUGCCACCGGCCGCCGGCUCCGCCCUGGACCCCGCCCCACAGGCCUCAUCACCUAUAGet precursor sequence |
| Structure | 10 20 30 40 50 CCGCAGUGAGAUUUGGGGC----| AUG C A AU CCGGAUG CGGGG CCG GGCGGGG CGGCG UGGU C GCCCC GGU CCGCCUC GCCGC GCCA G AUAUCCACUACUCCGGACACCCC^ A-- C G CG CCGUGGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-1908_5p |
| mirBase accession | None |
| Sequence |
0- CGGCGGGGACGGCGAUUGGUC -21
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|
| Star sequence | Cja-Mir-1908_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- CACCGGCCGCCGGCUCCGCCCUG -58
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|
