| MirGeneDB ID | Cja-Mir-1908 |
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| Family name |
MIR-1908 (all species) |
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| Seed |
GGCGGGG |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-1908
Mml-Mir-1908
Pab-Mir-1908
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021925.1: 115597810-115597867 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCGCAGUGAGAUUUGGGGCCGGGGAUGCCGCGGCGGGGACGGCGAUUGGUCCGGAUGCGUGGUGCCACCGGCCGCCGGCUCCGCCCUGGACCCCGCCCCACAGGCCUCAUCACCUAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCGCAGUGAGAUUUGGGGC----| AUG C A AU CCGGAUG
CGGGG CCG GGCGGGG CGGCG UGGU C
GCCCC GGU CCGCCUC GCCGC GCCA G
AUAUCCACUACUCCGGACACCCC^ A-- C G CG CCGUGGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cja-Mir-1908_5p |
| mirBase accession | None |
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| Sequence |
0- CGGCGGGGACGGCGAUUGGUC -21
Get sequence
|
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| Star sequence |
Cja-Mir-1908_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
35- CACCGGCCGCCGGCUCCGCCCUG -58
Get sequence
|
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