| MirGeneDB ID | Pab-Mir-1908 |
|---|
| Family name |
MIR-1908 (all species) |
|---|
| Seed |
GGCGGGG |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cja-Mir-1908
Hsa-Mir-1908
Mml-Mir-1908
|
|---|
| Node of Origin (locus) |
Simiiformes
|
|---|
| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 13276820-13276877 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCGCAGUGUGAUUUGGGGCCGGGGAUGCCGCGGCGGGGAAGGCGAUUGGUCCGGAUGUGUGGUACCACCGGCCGCCGGCUCCGCCCCGGCCCCCGCCCCACACGCCGCAUCACUUACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCGCAGUGUGAUUUGGGGC----| AU C AA AU CCGGAUG
CGGGG GCCG GGCGGGG GGCG UGGU U
GCCCC CGGC CCGCCUC CCGC GCCA G
ACAUUCACUACGCCGCACACCCC^ -- C GG CG CCAUGGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pab-Mir-1908_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CGGCGGGGAAGGCGAUUGGUC -21
Get sequence
|
|---|
| Star sequence |
Pab-Mir-1908_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- CACCGGCCGCCGGCUCCGCCCCG -58
Get sequence
|
|---|
