| MirGeneDB ID | Cja-Mir-3138 |
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| Family name |
MIR-3138 (all species) |
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| Seed |
ACGGUGA |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Hsa-Mir-3138
Mml-Mir-3138
Pab-Mir-3138
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021917.1: 180200611-180200672 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGCUGGAGCCUUCCCCUGCCCUCCUCAGCACUCCCCCCACUUCACUGCCUAGGUACCCACAAGACUGUAGACGGUGAGGUGGGGGGAGUUCUAAGGAGGGACAGCUGGGCCUGAGAGGCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAGCUGGAGCCUUCCCC- -| C C C GGUACCC
UG CCCUCCU AG ACUCCCCCCACUUCACUG CUA A
AC GGGAGGA UC UGAGGGGGGUGGAGUGGC GAU C
GACGGAGAGUCCGGGUCG A^ A U A GUCAGAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
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| Star sequence |
Cja-Mir-3138_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACUCCCCCCACUUCACUGCCUA -22
Get sequence
|
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| Mature sequence |
Cja-Mir-3138_3p |
| mirBase accession | None |
|---|
| Sequence |
40- GACGGUGAGGUGGGGGGAGUUC -62
Get sequence
|
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