| MirGeneDB ID | Pab-Mir-3138 |
|---|
| Family name |
MIR-3138 (all species) |
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| Seed |
CGGUGAG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cja-Mir-3138
Hsa-Mir-3138
Mml-Mir-3138
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054682.2: 9053480-9053541 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAGCUGGAGCCUUCCCCUGCCCUCCUCGGCACUUCCCCCACCUCACUGCCUGGGUGCCCACAAGACUGUGGACGGUGAGGUAGAGGGAGUGCCGAGGAGGGGACAGCUGGGCCUCAGAGCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAGCUGGAGCCUUCCCCUG-- CCC -| UGGGUGCCC
CCCUCCUCGGCACUUCC ACCUCACUG CC \
GGGAGGAGCCGUGAGGG UGGAGUGGC GG A
ACCGAGACUCCGGGUCGACAG AGA A^ UGUCAGAAC
120 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-3138_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- ACUUCCCCCACCUCACUGCCU -21
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-3138_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
41- ACGGUGAGGUAGAGGGAGUGC -62
Get sequence
|
|---|
