| MirGeneDB ID | Cja-Mir-3173 |
|---|---|
| Family name | MIR-3173 (all species) |
| Seed | GCCCUGC |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-3173 Mml-Mir-3173 Pab-Mir-3173 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 125859871-125859932 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGUCUUUGUUGGUCUUGGGCCAGCUUCCCUGCCCUGCCUGUUUUCUCCCUUGUGAUUUUAUGAGAGAGAAGGAAGAAACAGGCAGGCCAGGGAAGCUCUCUGUCUCCCUCCCUCUCUUGUGGet precursor sequence |
| Structure | 10 20 30 40 50 GAGUCUUUGUUGGUCUU----| CC C UC -- GUGAUU GGG AGCUUCCCUG CCUGCCUGUUU UCC CUU U CUC UCGAAGGGAC GGACGGACAAA AGG GAG U GUGUUCUCUCCCUCCCUCUGU^ -- C GA AA AGAGUA 120 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-3173_5p |
| mirBase accession | None |
| Sequence |
0- UGCCCUGCCUGUUUUCUCCCUUGU -24
Get sequence
|
| Star sequence | Cja-Mir-3173_3p* |
| mirBase accession | None |
| Sequence |
39- AAGGAAGAAACAGGCAGGCCAGG -62
Get sequence
|
