| MirGeneDB ID | Cja-Mir-3173 |
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| Family name |
MIR-3173 (all species) |
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| Seed |
GCCCUGC |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-3173
Mml-Mir-3173
Pab-Mir-3173
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 125859871-125859932 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGUCUUUGUUGGUCUUGGGCCAGCUUCCCUGCCCUGCCUGUUUUCUCCCUUGUGAUUUUAUGAGAGAGAAGGAAGAAACAGGCAGGCCAGGGAAGCUCUCUGUCUCCCUCCCUCUCUUGUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GAGUCUUUGUUGGUCUU----| CC C UC -- GUGAUU
GGG AGCUUCCCUG CCUGCCUGUUU UCC CUU U
CUC UCGAAGGGAC GGACGGACAAA AGG GAG U
GUGUUCUCUCCCUCCCUCUGU^ -- C GA AA AGAGUA
120 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cja-Mir-3173_5p |
| mirBase accession | None |
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| Sequence |
0- UGCCCUGCCUGUUUUCUCCCUUGU -24
Get sequence
|
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| Star sequence |
Cja-Mir-3173_3p* |
| mirBase accession | None |
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| Sequence |
39- AAGGAAGAAACAGGCAGGCCAGG -62
Get sequence
|
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