| MirGeneDB ID | Pab-Mir-3173 |
|---|
| Family name |
MIR-3173 (all species) |
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| Seed |
GCCCUGC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cja-Mir-3173
Hsa-Mir-3173
Mml-Mir-3173
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 99541046-99541106 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GAGUCUUUGUUGGUCUUGGGCCAGCUUCCCUGCCCUGCCUGUUUUCUCCUUUGUGAUUUUAUGAGAGCAAAGGAGGAAACAGGCAGGCCAGGGAAAUGCUCUCUCUCUCCCUCUCUUGAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGUCUUUGUUGGUCUU---| CAGC C UGAUUU
GGGC UUCCCUG CCUGCCUGUUUUCUCCUUUG U
CUCG AAGGGAC GGACGGACAAAGGAGGAAAC A
CGAGUUCUCUCCCUCUCUCU^ UA-- C GAGAGU
. 110 100 90 80 70 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Pab-Mir-3173_5p (predicted) |
| mirBase accession | None |
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| Sequence |
0- UGCCCUGCCUGUUUUCUCCUUUG -23
Get sequence
|
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| Star sequence |
Pab-Mir-3173_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- AAGGAGGAAACAGGCAGGCCAG -61
Get sequence
|
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