| MirGeneDB ID | Pab-Mir-3173 |
|---|---|
| Family name | MIR-3173 (all species) |
| Seed | GCCCUGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-3173 Hsa-Mir-3173 Mml-Mir-3173 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 99541046-99541106 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GAGUCUUUGUUGGUCUUGGGCCAGCUUCCCUGCCCUGCCUGUUUUCUCCUUUGUGAUUUUAUGAGAGCAAAGGAGGAAACAGGCAGGCCAGGGAAAUGCUCUCUCUCUCCCUCUCUUGAGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAGUCUUUGUUGGUCUU---| CAGC C UGAUUU GGGC UUCCCUG CCUGCCUGUUUUCUCCUUUG U CUCG AAGGGAC GGACGGACAAAGGAGGAAAC A CGAGUUCUCUCCCUCUCUCU^ UA-- C GAGAGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-3173_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCCCUGCCUGUUUUCUCCUUUG -23
Get sequence
|
| Star sequence | Pab-Mir-3173_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- AAGGAGGAAACAGGCAGGCCAG -61
Get sequence
|
