| MirGeneDB ID | Cja-Mir-3187 |
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| Family name |
MIR-3187 (all species) |
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| Seed |
UGGCCAU |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-3187
Mml-Mir-3187
Pab-Mir-3187
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| Node of Origin (locus) |
Simiiformes
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| Node of Origin (family) |
Simiiformes
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 498263-498322 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCGGGGUCGUCCAGCGAGGGCGCGCUGGCCCUGGGCAGCGUGUGGCUGAAGGUCACCAUGUUCUCCUUGGCCAUGGGGCUGCGCGGCGCCAGCAGGUCCACGUCCACGCUGGCGCGCUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGCGGGGUCGUCCAGCGA-- GC C G GU-| G UCACC
GGGC GCUGGC CUG GCAGC GUGGCU AAGG A
CCUG CGACCG GGC CGUCG UACCGG UUCC U
UUCGCGCGGUCGCACCUGCA GA C G GGG^ - UCUUG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Star sequence |
Cja-Mir-3187_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCUGGGCAGCGUGUGGCUGAAGG -23
Get sequence
|
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| Mature sequence |
Cja-Mir-3187_3p |
| mirBase accession | None |
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| Sequence |
37- UUGGCCAUGGGGCUGCGCGGCGC -60
Get sequence
|
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