| MirGeneDB ID | Pab-Mir-3187 |
|---|
| Family name |
MIR-3187 (all species) |
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| Seed |
UGGCCAU |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Cja-Mir-3187
Hsa-Mir-3187
Mml-Mir-3187
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 561286-561345 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGCGGGGUCGUCCAGCGAGGGUGCGCUGGCCCUGGGCAGCGUGUGGCUGAAGGUCACCAUGUUCUCCUUGGCCAUGGGGCUGCGCGGGGCCAGCAGGUCCACGUCCACGCUGGCGCGCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGCGGGGUCGUCCAGCGA-- UGC G GU-| G UCACC
GGG GCUGGCCCUG GCAGC GUGGCU AAGG A
CCU CGACCGGGGC CGUCG UACCGG UUCC U
UUCGCGCGGUCGCACCUGCA GGA G GGG^ - UCUUG
. 110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-3187_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- CCUGGGCAGCGUGUGGCUGAAGG -23
Get sequence
|
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| Mature sequence |
Pab-Mir-3187_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UUGGCCAUGGGGCUGCGCGGGGC -60
Get sequence
|
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