MirGeneDB ID | Cja-Mir-576 |
Family name |
MIR-576 (all species) |
Seed |
UUCUCAU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-576
Mml-Mir-576
Pab-Mir-576
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021917.1: 83930205-83930266 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUAACUGCACCAUUUUGCAAUCUAAUGAGGAUUCUCAUUUCUCCACAUCCUUGGUAAUAAGUUUUGGCAAAGAUGUGGAAAAAUUGCAAUCCUCAUUGGAUCGGUUAUAACCAUCCUAGUGG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUAACUGCACCAUUUUGCA--| CUC C C GUAAUA
AUCUAAUGAGGAUU AUUU UCCACAUC UUG A
UAGGUUACUCCUAA UAAA AGGUGUAG AAC G
GGUGAUCCUACCAAUAUUGGC^ CGU A A GGUUUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-576_5p (predicted) |
mirBase accession | None |
Sequence |
0- AUUCUCAUUUCUCCACAUCCUUG -23
Get sequence
|
Star sequence |
Cja-Mir-576_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AAGAUGUGGAAAAAUUGCAAUCC -62
Get sequence
|