| MirGeneDB ID | Cja-Mir-579 |
|---|---|
| Family name | MIR-579 (all species) |
| Seed | UCAUUUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-579 Mml-Mir-579 Pab-Mir-579 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 169635670-169635726 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UGGAAUCAUAUUAGAUUGAUGCAAAAGUAAUCACGGUUUGUGCCAAAUGGCGAUUUGAAUUGAAUUCAUUUGGCACAAAUCACGAUUACUUUUGCAUCAACCUAAUAUAGUAUAUGUGet precursor sequence |
| Structure | 10 20 30 40 50 UGGAAUCAUAUUAGAUU--| AC CGAUUUG GAUGCAAAAGUAAUC GGUUUGUGCCAAAUGG \ CUACGUUUUCAUUAG CUAAACACGGUUUACU A UGUAUAUGAUAUAAUCCAA^ CA UAAGUUA 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14) |
| Star sequence | Cja-Mir-579_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UCACGGUUUGUGCCAAAUGGCGA -23
Get sequence
|
| Mature sequence | Cja-Mir-579_3p (predicted) |
| mirBase accession | None |
| Sequence |
34- UUCAUUUGGCACAAAUCACGAUU -57
Get sequence
|
