MirGeneDB ID | Cja-Mir-579 |
Family name |
MIR-579 (all species) |
Seed |
UCAUUUG |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-579
Mml-Mir-579
Pab-Mir-579
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021916.1: 169635670-169635726 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGGAAUCAUAUUAGAUUGAUGCAAAAGUAAUCACGGUUUGUGCCAAAUGGCGAUUUGAAUUGAAUUCAUUUGGCACAAAUCACGAUUACUUUUGCAUCAACCUAAUAUAGUAUAUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UGGAAUCAUAUUAGAUU--| AC CGAUUUG
GAUGCAAAAGUAAUC GGUUUGUGCCAAAUGG \
CUACGUUUUCAUUAG CUAAACACGGUUUACU A
UGUAUAUGAUAUAAUCCAA^ CA UAAGUUA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Cja-Mir-579_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UCACGGUUUGUGCCAAAUGGCGA -23
Get sequence
|
Mature sequence |
Cja-Mir-579_3p (predicted) |
mirBase accession | None |
Sequence |
34- UUCAUUUGGCACAAAUCACGAUU -57
Get sequence
|