MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-579

Family name MIR-579 (all species)
Seed UCAUUUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-579  Mml-Mir-579  Pab-Mir-579 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021916.1: 169635670-169635726 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAAUCAUAUUAGAUUGAUGCAAAAGUAAUCACGGUUUGUGCCAAAUGGCGAUUUGAAUUGAAUUCAUUUGGCACAAAUCACGAUUACUUUUGCAUCAACCUAAUAUAGUAUAUGU
Get precursor sequence
Structure
        10          20        30        40        50        
UGGAAUCAUAUUAGAUU--|              AC                CGAUUUG 
                   GAUGCAAAAGUAAUC  GGUUUGUGCCAAAUGG       \
                   CUACGUUUUCAUUAG  CUAAACACGGUUUACU       A
UGUAUAUGAUAUAAUCCAA^              CA                UAAGUUA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Cja-Mir-579_5p* (predicted)

mirBase accessionNone
Sequence
0- UCACGGUUUGUGCCAAAUGGCGA -23
Get sequence
Mature sequence

Cja-Mir-579_3p (predicted)

mirBase accessionNone
Sequence
34- UUCAUUUGGCACAAAUCACGAUU -57
Get sequence