| MirGeneDB ID | Pab-Mir-579 |
|---|
| Family name |
MIR-579 (all species) |
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| Seed |
UCAUUUG |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cja-Mir-579
Hsa-Mir-579
Mml-Mir-579
|
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| Node of Origin (locus) |
Simiiformes
|
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| Node of Origin (family) |
Simiiformes
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054683.2: 32947756-32947815 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGAAUCAUAUUAGGUUAAUGCAAAAGUAAUCGCGGUUUGUGCCAGAUGACGAUUUGAAUUAGUAAAUUCAUUUGGUAUAAACCGCGAUUAUUUUUGCAUCAACUUAAUACAGUCUAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGGAAUCAUAUUAGGUUA--| CGAUUUGA
AUGCAAAAGUAAUCGCGGUUUGUGCCAGAUGA A
UACGUUUUUAUUAGCGCCAAAUAUGGUUUACU U
GGUAUCUGACAUAAUUCAAC^ UAAAUGAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Pab-Mir-579_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UCGCGGUUUGUGCCAGAUGACGA -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-579_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UUCAUUUGGUAUAAACCGCGAUU -60
Get sequence
|
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